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I use both Macs and PCs. I have a pen drive that is in exFAT format and it is 64GB.I am planning on making a bootable live Ubuntu pen drive. I read online that the operating system takes up to 2.5GB space, so if I don't use it to boot and if I plug it in when the system is already running will I be able to use the remainder of the space in Mac or Windows without affecting Ubuntu(The current exFAT format makes it usable in both OSes). If yes- will I be able to access the files that I loaded onto the pen drive through OSX or Windows when I boot up Ubuntu.

A Nerd Has No Name
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As long as the files you want to use on Windows and Mac are on a seperate partition, it shouldn't do anything to Ubuntu