I have a repository that looks something like this:
foo/
subrepo/
a_file_in_subrepo
another.ext
unrelated_file
subrepo is a repository on github, and I have a remote in my repository, say sub, that tracks it, but none of the files are merged.
What I want is to merge in sub/master at the subrepo folder. I know that a_file_in_subrepo and another.ext are exactly as they are in sub/master but if I run git merge -s subtree sub/master I don't get what I want, and instead get:
foo/
subrepo/
a_file_in_subrepo
another.ext
unrelated_file
a_file_in_subrepo
another.ext
I'm really confused. I know it guesses the directory to merge into automagically, can I override that?