That's not how sets and set operations work. Sets cannot contain duplicates.
You should treat the two arrays not as sets, but as (unordered) sequences. A possible algorithm would be: make a list from the sequence superset, then remove one by one each element of the sequence subset from the list until you are unable to find such an element in the list.
bool IsSubList(IEnumerable<int> sub, IEnumerable<int> super)
{
var list = super.ToList();
foreach (var item in sub)
{
if (!list.Remove(item))
return false; // not found in list, so sub is not a "sub-list" of super
}
return true; // all elements of sub were found in super
}
var subset = new[] { 9, 3 };
var superset = new[] { 9, 10, 5, 3,1, 3, 3 };
var isSubSet = IsSubList(subset, superset);